Collection of materials
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R basics
Basic R course (Sandpaper)
First R Markdown report (HTML)
Introduction to R — browser exercises
Mini-project questions (HTML)
Tidy Data (HTML)
Python basics
Chapter 2: Lists, Dictionaries and Sets
Chapter 3: Loops and conditions
Chapter 4: Functions, Numpy and Biopython
Day 3 — Basic Python
Day 5 — Basic Python
DNA Translation and Pairwise Identity Workflow
Intro to Pandas and Matplotlib
Intro to Pandas and Matplotlib (PPTX)
Python Basics Cheatsheet (PPTX)
Querying GFF
Simple Data Types / Прості типи даних
Advanced
1 Neural Networks
1 Perceptron From Scratch
2 Mlp Xor Problem Solutions
3 Convolutional Neural Networks
Digital image classifier
Transformers with PyTorch
Lectures
BashLand Course (PDF)
Introduction to Modern Biological Data — Helena Crowell (PDF)
Machine Learning (PDF)
Neural Networks (PDF)
Tidy Data (HTML)
Research highlights
260713 Bds3 Julia Ruehle Transcription Factors (PPTX)
260714 Bds3 Helena Crowell Spatial (PDF)
Perturbation Assays (PDF)
Usbrg (PDF)
Post-school materials
Recommended post-school resources
Bio Data Science
University of Zurich
Usbrg
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